Syrian state media reported that the Syrian air defenses in the border areas intercepted some of the Israeli missiles fired in, stopping attacks in the village of Hader, and ensuring the attack caused only material damage.
Israel seized 1,200 square kilometers of the Golan Heights in the Six-Day War of 1967 and later annexed it in a move never recognized by the worldwide community.
Israel sees the recent developments in Syria as critical to shaping the future, in which the Israeli leader does not want Iranian presence in Syria.
"The consequences are not merely to the Iranian forces there but to the Assad regime as well", he said.
Russian officials had no immediate comment after Putin's meeting with Netanyahu.
David Keyes, a Netanyahu spokesman, denied that the prime minister made that statement to Putin.
After bombing Iranian units in Syria in retaliation, an Israeli F-16 was shot down by Syrian anti-aircraft fire.More news: The Surface Go Is Microsoft’s Next Big Thing
"We were afraid in the beginning to come (because we regarded Israelis) as Zionists and enemies", said one woman, who brought her son for treatment.
"Israel can not allow [an] Iranian presence inside Syria".
A senior Republican lawmaker on Thursday warned Israel against striking a deal with Russian Federation on the future of Iranian forces in Syria at the expense of the United States' interests in the country.
On June 24, Israel's military said it launched a Patriot missile at an incoming drone from Syria, which turned away unscathed. The interception set off sirens on the Golan and nearby Jordanian border.
Earlier on Wednesday, the Israeli army said the downed drone may have been on an intelligence mission.
"[It] is a flawless play in that sense because it's aspirational, it's murky, it would take years to accomplish, and yet they could declare it as some tangible outcome", he said. That has raised Israeli concerns that he may try to deploy troops there in defiance of a 1974 United Nations demilitarization accord on the Golan.
But on Tuesday, Israel also signaled openness to eventual ties with Syria under Assad, a tacit acknowledgment that he was re-consolidating power as he beats back the rebels.